DreINT0175771 @ danRer10
Intron Retention
Gene
ENSDARG00000071084 | wipf1b
Description
WAS/WASL interacting protein family, member 1b [Source:ZFIN;Acc:ZDB-GENE-110815-1]
Coordinates
chr6:10545719-10548574:-
Coord C1 exon
chr6:10548461-10548574
Coord A exon
chr6:10548292-10548460
Coord C2 exon
chr6:10545719-10548291
Length
169 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
TGTGTTTCTGTCTGTTTCAGGTT
3' ss Score
14.46
Exon sequences
Seq C1 exon
ATGAATGGGAATCACGCTTCACATTCCGGCCTGTATCGGATCTTCCACCCCCAGATCCCTACATCCCCTGTCAAAAGACCTACCCCAGCAAAATAGTGCGAAATGAAAGCCGAG
Seq A exon
GTAACCAATCCCAGTCATCTTATTCCCTTTTTTTTTGCTGTGCACATAGACAAAGCTGACCCACAGCTGTCGCTTTCCCATGCCAGTGAATGTTTTGAATAACTCTCAGCACAATCGTGGCCTTATCCATTTGTTTATGTGCCTACGTGTGTGTTTCTGTCTGTTTCAG
Seq C2 exon
GTTCAGGGAAGAAAGAGCGAGGAGCACCTCCCCTGCCTCCTATACCTAGGTGAAAAAGAAAAAGGCCTGACAATCCTTCCCTTTCCTGATTTTCTAAGTTTCTCTGGAACTGTTTGTTTCTGTGATGTTGTTTTTTCTGCCAGAGTAATTCATTAAAATATATATAAAAAAATCATGTATAAAAGAAGTATAAAAACAGTTTTCTGTTAAAACACCCCTTATTCTATACAGTTTTGTTGTTGTTTGCTTCAGAAATGATTCTCAATTGCTTTTTTGCCTGTCGAGTGATGAGTTACAATAATACTAAAGCTAAGTTTGACTGTTTTGTTTTTGAATGAGAAGAATTGTTGTGCCATTTATTGTCCCTCAGGGACATGCTGAAAGTTTTAGGAGTTTGCCACTTCTACTGTTTTGATGTTTATGTCTAAGCAATACACTTCTCAAGGATATAATGAAAAACTTATAGGCCTTTGGGTGCAGGATATCGTCGTATTTCGATGAGTTTTGGCGCCCTCTGGCTGTTTTTATACAACAACACAGTAGCAAATTAGCATCTACTTTTTAAGCTTCCAATGGCAGTAAAATCAGGTAACTTGAACAAAATGTCAGGTAACTTGAAGTGGCTGACTGAAATGCTCACGTAATAATATTTGATAGAAAAACGTTTGCTTTAGTTATGTGGTGATAAAGGACAAAAAGTTACACAGAACACTGAATATTGTGTGAATGGTACTAGCATCAGATGTATTAACATACAAGTCCTTATGTGAAATTAGGAGGGACTGAATTCATGGAGAACTGTAGATGGCCATTATTAGATTTATAGATCACTCAAAATCAAAACAATTTCTCACCAAACTCAAGTGGTTCTTAGCAATTTATGAATTTCGTGTGTTGCACACAAAAAACATGATAATCTGAAGATTTGTTCTTGAGGGAAAGCAGCCTTTTCATTTTTAGGGGGGTGAACTACGCCTTTAAATGCTCTGCAGATCATTTTAACAAGTCTTGGAGCTGACATATGACTATTCCTGATAGATATAAGCCAAAAATGTGTTTAAAAAATGTTGTATGCACTTGCTTATGTTGCTAATGTTAGCTCAGTATTACGTTGCCTTATATGTATATTTTTCAGATGTTTACTATTATATTTTACAGTGCTTGACTTAAAGTATAATCAGAAAGCGTATTATACCTTGAGCTGCATTTAATATGTTTTCTTCATTTGTGTACTTGTAGTGAAAGAATCAAAAGTCCAGGTTAATGCTGCCTTTTGTTTGTTTACATGGGAATGGCCTTTAAAGAAACATTAAAAAATCACTTAAACAAGAGAGAAGCACAGCCAAAAAAGACACAATATGTGGCACCAACATTATTATTAAAACTAAGGCATGATTTATTATGTTGTGCTTGCAAAGATATTGCGGTATGATCAAAAGCTTGCGATGGTTCACCCAGAAATGAAAATTCTGTCATTTACTTGCCCGTCTCTTTGATTTTATTTCTTCTCTTGAAAAAGAAGCTTTAAAAATGTTTGAAAGCAGTAGTCATTGACTTCCATAGTATGTTTTCTATTAATGTCAGTGGTTACTGGTTTTCAAGTTCTCTTGAAAAAAAGCTTTAAAAATGTTTTTTAAACCAGTATCCATTACTCCATAGCATTTCTTTTTTTTTTTTAATGAATGTCAGTGATTACTGTTGCTCAACATTCTTCAAAATATCTTCTTTTGTGAAAAAAAAAAAACATTTGAGGGTGAGGAAATAATACCAGAATATTCATTATTGCGTGAACAATCCCTATAGGCTAACATGGTACGGTAATGTTCACTTTGTGCCTTAATATAGCTACAATTTTAGTTCATACAACGTTATGTTGTTTAATTTGTATTTTTTACTATACAGTAATACAAAAAAGAGCTATTCTTGTGTGCCAAATGTGCTGTTTTCTAAATAAACATGCAAGCAAAGCTGGATTTTGTATTTCATTTTATTTAACGCTCATTTCTATGCGTTTCATTTGTTGTGAAGCTGTTTTCAGTATGCTGACTGCACACAAATGTTCTTTGTATGTTTTGTTGTTGTTTGATTTCAGTGCACTTTTTTTTCAGAAATTCTGAAATAAATTAAGAAAATGAAACACACTTCATTCAAACAAGAAATACCAGGTAAACAATGCCCTAGAAGATTCCCTCAGTACTAATATTAAAATGTCATTTACTCTCAGTTCTCCTACAAACCTCTTTGATTTTCTTTCTGCTTTTGAAAAAGAAGCTTTAAAAAATGTTTTTGAAACCAATTGTCATTAACTACTATGCATGTCAGTGATTACTGTTGCTCAACATTCTTCAAAATATCTTCTTTTGTGAAAAAAAAAACATTGGAGGGTGACAATAACGAACAATCCCTATAGGCTAATATGGTACGTTAATATGTTCACTTTGTGCCCTTATATGGCTACAATTTCAGTTCATACAACGTTATGTTGTTTAATTTGTATTTTAGTATACAGTAATACAAAAAGAACTATTCAAGTGTGCCAAATGTGCTGTTTCCTAAATAAACATGCAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071084:ENSDART00000151661:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGGAATCACGCTTCACA
R:
ACAACATCACAGAAACAAACAGTTCC
Band lengths:
244-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]