MmuINT0176098 @ mm10
Intron Retention
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73429610-73434143:-
Coord C1 exon
chr2:73434030-73434143
Coord A exon
chr2:73432466-73434029
Coord C2 exon
chr2:73429610-73432465
Length
1564 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TATCTGCTTTCTTCATCAAGGTG
3' ss Score
7.92
Exon sequences
Seq C1 exon
ATGAGTGGGAAAGCAGATTCTACTTCCATCCGATTTCTGACTTGCCGCCTCCAGAGCCATACGTACCGACAACCAAGACGTATCCCAGCAAACTGGCCAGAAACGAAAGCCGAA
Seq A exon
GTAAGTATCTCTGCCTGAGCGCTGTGCAGGCTCACACTGTGAGAGCCTGGGTTCCAGAGGCCAGCCCACTTGCCTGGGGTGGAACAGGAAGCTCCTTTGAGAGCTGTGTGCACTCTGGTAGCCTCTCAGGTATAGCCAGAATGAGCAGTAACTCTCTGAAGGTGACCTTACCATCTCAGAATACATCTGGTGGACCAGTATTGAGTTATACTATTTTGCTTCTTTGGGTCATTTCCTTCATTTTGACCTTCCTAGGAGATGAAAGGTCAGTCCATCTTCTATTCCTACTAGTTTGAGACTGGCAAAATGTCATATAAAAAAATTAAATTAAAACAAAATACTGCCTTGATTTTTTAAATGCATTATGGCCACAGATTTGTATATGTATTCAACATACATACACATGTATATATATTCAGCGTAGGTTCATATATACATACTCGTGTGCGTGCGTGCATGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCTCACAGAACAGACATTTTCATCCCACCAGACCCTCTTCCTCTTGTTTTCCATCTAATTCTGACTTTTTACACAGTGGTAACGACAGTAGACCATATCTGGTGGTAGGTTTTTACATAACATTGCTTAGTAAACACGCCCCTGTTTTATCACTTGGTTTTTATTCTGCGGGAGTCCATTAAGTCTTCATACAAGAACTTGCCAGCATTGCACATTTGGATCGTCTCCCCTTGCTTGCTAACGTGCATGCTGCCTGCAGCATCATCTTCTCCCTGCTGGAGAAGAAATGTGAACCAAGAGGTAGAATAGAAACATTGGAATTTCACAGCAAAATATGTACAGGACTAAGAAAAAGAATGGCATGGAATTTCACACCAAAGTATGCACGGAACTGAGAGAAAATTAACATGGAATATGGAAAACAGCTACTGATGGGCATTAGGCTCGAACGAGACTCAGACTCGCAGAGACCTAAGCCTCGGAATTAATGCCTCGAGTCAGACAGCACCCTAGCACAGTACCTCAGAGAAGCTCAGGGCCTGCTGAGTCCCTCTCAGCACACAGCTCTTGAGTAACCGTTGGTCAGTGGGTGCCCAGCCTTTGAGCAGCTGAATACCAGCTGAAGTCAAGGCTGCTTAGAAGCACAAACATCATGACCAAGAAGCAAATTGGGGAGGAAAGGGTTTATTCAGCTTATACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAATCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAAGGATGTTACTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTGTTTTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCCTCCCCACTTGATCACTAATTGAGAAAATGCCCCACAGCTGGATCTCATGGAGGCATTTCCCCAACTGAAACTCCTTTCTCTGTGGTAATTCCAGCCTGTGTCAAGTTGACACACAAAACCAGCCAGTACAAGCATCTAACCAAAATTATATTTTATCTGCTTTCTTCATCAAG
Seq C2 exon
GTGGATCCAACAGAAGAGAAAGGGGCGCCCCACCCCTTCCTCCCATCCCGAGGTGATCTCTGCCTGCTCCGTTCTACCCAAGCTCCAAAGCTGCTTCTGTTGTTGCTGTTTGAAAACTGCACACCCCTCCTCTCGATTTGCCACGCCCCCCCCAGAGAGAGTAGGAGGGAGGAACGGAAGCTGAGGAGGGGATCCCTGCGTGTGGGGGTGGGGATCGGGGAAAGAAGCGCCTAGCTGTTTATGTTGTATATATTCCTGAGCTATTGCTTGTATCAGCTGCAGCCTGCCAGGGTCAGACATCCACTGCTTTTTTGCAACAGACTGTAGTTGTTAAATCCCCTGAGAGCTGGTTTTCTCTATGCCTTTCTTGCTCACATGGCCTCTGGCCTGTTTCCACGAACCACACCGCCCAAGCGAGTTGCGAGCAAGCCCTGTGGTTACAGAACGTCCGATCTTCGGCTGTCTGAGGAAGGCTCCAGGACAGAGCTGTCTTAAAAGAAACATAATGTGAGCCCCATACCCTGTCTGAAAATGACTAGCAGCTATGTTTTATAAAGGTAGAAGGAAACAGATGAAAAGAATTGCATTTTACTCAGCACTGTGCATCTGAAATATCACTTCGACTTGTATTATTAATGAGCTATTTACATTTTTGGTACTAAGTCCTCACACTCGAGTAACCATTCTGTACTTGGAACAAGCACACTGCCAGATTTCAAGTGTCCACACCGGCCTCAGCACCACACTGTCAGACGGTCTGGAAGACAGGAGTTAGGACAGCTTGTGCCTAAAAAGGCAAATTGAGTTTTAGCAATTCAGGAGATGTCCCAAGACGGAGTCAGAACTTGATACAATGTTTGGCAGGCAGTGAGACCTTAGATTTTTGACCCTTATTCTGCCTTTGTCCTTAATATGTATGTCCAGGTGTTTCTTCAAAGTATCTTAGTGAGAAATGTATCTAGTAGAGTTTACAGTCCCGTTTACAGTGGATTGCAAACTCCACTGCAAGAAAACAAAACTGTGTGGGTACTCCCTGGCTTAGAACCAGCTGGCTTGTGCACTGCTGGTCACTGGCCTTGCGCATCTTCTGTGGCTCTTCAGTCCTCCACCCCAGAGAAAACTCCTTCCTCAGGTCAGGAAAGGCTAGTAGGGCAAGATAGGAGAAGAAAGTCAGAGAATGTATCAGAACTATGGGAGAAGAGGATAGCGTTGATGATGGGCAGAGCTCTACACAACCGACTGGGGTCAAGTAGATTAAGGAGCTTACCAGTGGAACCTAGAAAGCATTGGTGTTGAATTTCTTGGGAGAATCATTGTCTTGGATCTGTGCAAGTAAGTTCCACTAAAGGATGGATCACAAAAAGGGCCAGGCTTGCCTTTTTTATATATATGACTTTGTTTACAACATTTTACTGGGACTTTCAAACCTAGCTGTAGAGTTGGAAAAAGATTTCCATTTTGATGTTTTATATAATCATGTTTAATGTTACCATTGTCTATTAAAGCACATGGCCACATATGTGTACCTACCTGAACTTTGTATTTTGGGTCCAGCGTATTGCTCACATGTTGCTGTCACATGTTGCTGAAAGATGCTAATAAAAAAAAATCAATCCAAAGAAAAATGGAAAGACATTCCTATTTATAGAATGATTGTTTCGTTTATATAAAAGCATAACTTAGGAGTTCTAATAGATGAAAAGTCTAATAAATTATAAAGTGATTGATTTGAATATATTGTATTTTTATAACTTTCCTTGCCAAAGCCCAGACCTAGTTCTTTAGAGAGTAGTTTTCCTCCCTTCTCCTCCACCATTTGTCGGTCTTCCATGAGAACAAAGAAATAAAAGGGTTAACAAGCTTGACAATTTTTTTATTCCTAACATTTTAAAATGTATTTCGAATTCTTTGATCTGATATTCACTAGGATAAACATCCTTTTCATAGACGCTCAATGACCTACTTTACTGAAAGTCGAATTGGTCCTTCCTTGTGCTGTGTATGGAAGAGAAAGGTTGGACTCAAAGATTGTGGGTCTCAGTTTTTTAAGGGATAGTGAAAATTGGACAAGTTCTGGTAAATAAATCTCAGTTTTCAGGTACATTTCTAAGTCAGGGACGGGTCACAGCTCAAAGTTGCCATTCATAATAAAGAAGGTTTAGAATGCATTTTGCAAAGAATGTTTCATTAATACACCTACATCCTATCTTTGGAAGTCAGTGACCCAATTGCATTTAAAACTCTTGAGAAGTTCTGGGTTTAGCTTAACCTATGGTAAATCATTTAAAAAAAAAAAGTCTATTTTCTTCCCTGAAATCAAAGCTTACATGTATGTTTTTCCATAATATTTCCAGTTATGTGTATTTAAGATGCAATGCAGTATTTTAACATTTGCAAATCATTTTATATGGAAATATATTGCAGTATTAAAATTCAGTGTTCTGTGTCTATTTCACTATGCATTTTATTTACTGAAAGCTGAGAAAATATTTAACCCAATGGTGCCTTACTGGTGATCTGAAAAGAATTGACTTGTTATGTCTAAGTAGTGGATTTGTTGCATATTTGTAAAAACTGTTAGGCCTTTATATTTTAACTTGTAATATCGATTTTGTTATTTTAGTACCAGAAACAGGGTGATTATTGAAGTCTCCTCAAACTTTTGGTATGAAATTTAACTTTCCCTGTTCATAGGCAGGAGCTGTAGAGGAATTTTTTCATACCACTGCACTGTGTAAACAGACACAGACATCTGTGTCATCAGGGTAGTTAAATGGTAGGGTAGAATCTACCATAGACACCTGCATGTTTGTAAATTATCCAGACAATGAATAAAAAGCAGAATGATACAGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284:ENSMUST00000094681:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAACCAAGACGTATCCC
R:
AAGCAGTGGATGTCTGACCCT
Band lengths:
358-1922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types