GgaINT0047296 @ galGal3
Intron Retention
Gene
ENSGALG00000009321 | Q5F3Q7_CHICK
Description
NA
Coordinates
chr7:18044510-18048845:+
Coord C1 exon
chr7:18044510-18044623
Coord A exon
chr7:18044624-18045930
Coord C2 exon
chr7:18045931-18048845
Length
1307 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ACTTTCTTCTTTTTTTTCAGGAG
3' ss Score
11.91
Exon sequences
Seq C1 exon
ATGAGTGGGAAAGCAGATTTTCTTTCCATCCTATATCTGATTTGCCACCTCCAGAGCCATATGTACCTGTGAATAGAAGTTACCCCAGTAAACTAGCAAGAAATGAAAACCGAG
Seq A exon
GTAAGTTTGTTCCACCTCTGGTGCTGGGATTTCAGCATATCTTCCTAGAAACAGCGTGGATGGGGAAGAGATTGGCTCCTGAGGTCTCAGAACTTCTCCAAGTGCTTTTCTCCTCGCCACCATGCAGAAAATGCTAAACACAGGTTCTCAGGCACAAGCCCCTTTAAACTTGCACTGTGGAGTGGGATGGGAGGAGGATTGTTTTCTTCCTAAGTTGTAACCTGTATTGTAAGATACTGCTTTGGCCATAATATTCAGCCCCCTTCTGCTACAGGCAGCCAGAGGTGCAAAATCCCGGCTTCACCTTTGATTTTTGTCTGGTTTTGTCCCTGTTACTCCTCTTGGAACACTCTTCTAGGACTTCTTTCTCATTCCCCATCTAAAACTATGCATGACTCATTTATTTGTGTACCAAAATCATCCTTGAGTTTTAGCTATTCTTCCTTGTTTGTGTGTTAAGCCCCTGCTATATATATATATATTTTTTAAGACAAGTAATACCCTCCTCTCAGCTTTTAATTTGCTGAGCTCATTAAACCAGGAAGTATTACGCTCTTCTTCCAAGCTAAATTCTGTTTCTCTGATCATCGATGTTGCTGCTGTATACATTTCAGCTTGACTTCTTCTTTTCTGATCAGTGTTACATGCTGTTCCAGTTGAGGTCTCAGGCATTCCATTAGTTAGTGCCATTTGGCCTGGTACACCCAAGGATTAATTCAATTCTTTCACAATAGGTCACATCAGTGCTCATAGTTATCCTGTAATCATCTGTACACTCACATGTTTCTCTGTCTGTCCTGTTTCCAAATTACGAGGTTTTGGTGTGGAGCAGAAATTCCTGTTAGTCTCTGACCCTTCTCTTTGGTTCTTACCTTTCTTCCCATTCCTATTACCCCAAAAAGGGAGTCAAAGAAATCAGTTTTGAATGAAAATCTTCATTTTGGGCAATACATGAAGAGCTTTGAAACATTACTACTCGAGCTTGCTGCTTTCATTGAAATGTACACATGTTACAAGTAGCACTGAGACCATATGTGTTCATATAGTAAGAGGGACTGATCTGTTTTGAAAAGGGAGCAAAGGACTGAAATGCTAATAGATCCTAGGCATTTGGAGATAACAGTAGTTACAAACTTAATTTTATGTTGTTTGAAGTTCTTGCGTTGTTTAGTAAACTAACCAGAAACTCTAGAAAGATCTTTTCTAAATGGTTAGGCAAGGAAATGAGTAGATCTTCTGGCTTGGATGTAAACTCCCACTATAAAAAGAACCCAAGAGTAACGGAAAACTTTCTTCTTTTTTTTCAG
Seq C2 exon
GAGGCTCTGCTCGAAAAGAAAGAGGTGTCCCCCCGCTTCCACCTATACCAAGGTGAAGTGGGTTCTGGCCCATTTTTGGGCAACATCTGTTCTACAAGATTTCTTTTGAGTCAGCTCTCCTGCCCACATCGTTGGAAAGTTGTCTGTTTTGCTCTATTTCCACTTTTGGCTTGTCAGCTGGAATAAACTTTAGTCTATTACAAAAGTAATAGACAAAGCTTATGAACTATAGTTGCTCAAAGCTATAAATTTTGTTTGCTTAAACTGCAGGCTGTCCTGAAATGCATTTTACGGACCATGCCCGACATACATGCGTCATGCTTACCAGGTCCAGCCCTGTCCTCTTGAGAGTTCCGTAGAGGTCTGGCTTTGAATTTAACGAGAGCTGGAACAAAGCTGTTTCATTCATGTGGGGTACAGTGGCTGTATTATTTGAACAATCAAGTACAATCTGTTTGCTGTTTATAAACCAACTGCCAGGGAATACTGTATAGCTGAGAATCCCCTGGAGCTTCTTTGCTTGCCTGACCTGGTCCATCTGCTTCTGCGAGCCATAGTCCTACTACATGGGACCGAAAGTTTATCTTCAATCTTTTCACCTCAGCTTAGCCAAGTAATTTTGTTTTATACTGTAGATAGCACGTCCTGTCCTGAGGATGGAGTGTGTCTGGCCTTATTTTTATCTGCAGAGAATCTTCCAAAGAGCACAAGTGAAGAATTCGGCAGCATAAAAATATCTTTTTTTACAACTTTTTTCCTTGTTTTGTAATAACATTACGGTTTTAATCACTTAATGCTTTTCTACTTTGATGTGAACCATCCTACAGTCATCTGTGTCCTGGGTTATTGCAATGCACTCCTGAGACTGCCTGCAAAGAGTTCTCCAAAAGTAGTCTTAGTGGAAATGCAGCAGTTATTGTCATTTTTCTTTCTGTAAAACATTTCTAACACCAGTGCTCCACAGACTGCTTTCCATTTGTTTCTTTGGTACAATTAAATGATGGGGTTTTAATTTAAAAAGCTTCCTGAGGCTTAGGTGACAGTCGCAGAGAGATTGTAGTTGACTCGTGTAACAGCAGAGCAGCTGAGGTAAAAAATGTGCATAGGTGGAAGCTTTTTGATGTCGTGAAGAAGGTCTGGGGTTTGTGTGTTCAAGTGGGAGCACGAGCTCCAAAATTTGCTGTCTGCACTGGTTCAAGAGGATGAGAAGATTTGGCCTTCTGAGTTTACCGTGAAGCCTATTCTTTCAACCTCCACTGAAGGGAGCCTCAGCAGAGAGCCACAAGGTTTATGCTCATAGAAGAAAGCGAAAAGTATTCTGTTGTTGTGACAATTGGTTTATATGTTTAATGGCTTTTGAATTTTGTGTTTGAGAAAAGAGTTTGTTGAATGAGTGTGTTTTGTAGAAGGATCCAAATGCATGTAAAATGCCTTTGAAAATTAGAGGAAGGTTTTAATGCTGAATTTTTGAATATTGCCAAATAATAGCTCTCTGTTAATTGGACTTCTGAAGTTTAACCCTGAAAAATTTCCCGTCTCCTCAACAGCATTTCTACAGCATGCTTCTTGGGACCCCTACAAAGCCTGTACCAGCAGCCCTGTTTCACTGGGTAAAAAGAAAAAAAAAAAAAAAAACAGGTCATGTTGGTTAAGAAAGTGTTTCTCTAGTGTGAGAGATGTGATCCTAAGCTGAGGCTAGAACGAGGTTAGCCCTAGAAAATGCAGGGAATGTAGCTGAAGACAGTTTGAACCCCACTGCAACGTCTGCATGTGGGGCTTCTTGCCCATCAGTGGGCTTGGAGGGGCAGACTGCCTCTGTCCCACCACTGGGGCAGTCACCATGAGGAGCACAAGGCAGAGCTGGGTGTGGCCACATCAACTTCTTGGCCTTTTTGGTATTTGTTTACAAAATCTTGTTAGCTGTGATAGCATTTGATTACATACAGGTTTTTACATTTTTTTGTATCTAATGACTTATTTTCAGTTACTATCTATGGTCTCGAACCTGCAATTGAGTGCGCAGGCGCAGGGATGTATCTACATCAAGTTGCAGGGTCGTGGCTGTAAGAGTTTCTTAAATATTAATGGGACCTCCATGTGACAGGTGCACCTTGGGATCAAGCGTAGCAATACTGAATTTCTATATATTTTATGGATGTCACTTAAACGTATGCACTATGCAAAGTGCCTGTCTCTTTGGCGTATTGTTATGTGAATAGAAGTCCAAATAAGATTTTTAGGATAATAACTTAAAGGATAAATTATTGTATTCGTGTTATTAAACTGAAGCACTTACAACTTTGAGGAGCAACATACTGAATTTAAGAATACAATATTTTCGATACATTGACCGGCCAAATCCTTAATATCCAAACAGCTATGCAGCCAAAAAAGCTAGAAAAAGTACAATCCAAGAGCCATACTGTGTCTTGTAACTTACCTGCTTCCAGTATGACTGTTTTACTTCAAGTAAAATGCTGCATATTGTTCTGCCACCCCTCTGCACCATTCAGAATTTCTCGTATTTAATCTTTTTAGTAAGGTTTGCTGACCAGAAAGACTGGACTTTAACCAGTGACTTGGCAAGTCAGCTTCAGTCTCACTTAAAATGTGCTACATAAAAGGCCCTCAGTTAACGAGCCGAAGAACCCAAGCTGCCTGTTGGTTTCAGCGCTTCCTTGTACTGTAGAAACCTCCTCAGAACAGCTGTTTGGCATGTATGTAAAGTACCTTGAAAATGCAGAAAGAGGTATTTTTTCACCTGGCAACAACTCAACTATTTATATCTTTTGCGATAAAATTCCCTAGCATAATTCAGAACAATGCAGCATTTTATCTTCCATATATCGCTTCACGTATCAGCAGCTTTTTACAGTATGATCAGTATTATGGTATTTATTTCACTATGAAGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009321:ENSGALT00000038663:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCACCTCCAGAGCCATAT
R:
AGGACAGCCTGCAGTTTAAGC
Band lengths:
351-1658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]