DreEX0085634 @ danRer10
Exon Skipping
Gene
ENSDARG00000091090 | xirp2b
Description
xin actin-binding repeat containing 2b [Source:ZFIN;Acc:ZDB-GENE-030521-26]
Coordinates
chr9:49755734-49771088:-
Coord C1 exon
chr9:49770994-49771088
Coord A exon
chr9:49767091-49767150
Coord C2 exon
chr9:49755734-49755864
Length
60 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTCCCTATAAAAGATT
3' ss Score
5.03
5' ss Seq
ACCGTAAGG
5' ss Score
6.08
Exon sequences
Seq C1 exon
AGGAGGATGAGTATTATCCAAAGCTCTCCACTAAAGAACTGGCACAGCATTTCGAGAAGACTATTGAAGAAGCAGCCCCTAGCAAGAAAATCAAG
Seq A exon
ATTGAACGTGACAAAAGCCGTGCACAACTGCAATCAGATGTCAGCGCATCCCATCAAACC
Seq C2 exon
ATTCGAGTACCAAAATCCGAGATGTGTGCGGTGTGCAAGAAGAGGGTTTACCCGATGGAAGGCCTGATAGCAGACAAAAAGAAGTTCCATAAATCATGCTTTTTCTGCGAGCACTGCAAAAACAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091090_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.233 C2=0.000
Domain overlap (PFAM):
C1:
PF103674=Vps39_2=FE(36.4=100)
A:
NO
C2:
PF103674=Vps39_2=PD(38.6=77.3),PF0041217=LIM=PU(59.6=77.3)
Main Inclusion Isoform:
ENSDART00000148707fB7146
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACAGCATTTCGAGAAGA
R:
TGTCTGCTATCAGGCCTTCCA
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]