DreEX0086344 @ danRer10
Exon Skipping
Gene
ENSDARG00000013207 | zeb1b
Description
zinc finger E-box binding homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010621-1]
Coordinates
chr12:26666819-26669692:-
Coord C1 exon
chr12:26669490-26669692
Coord A exon
chr12:26668990-26669101
Coord C2 exon
chr12:26666819-26668503
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGTGTTTTTTTTAGCGG
3' ss Score
9.98
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GCACGCCAGACTCATTTTCTCAGCTCCTCACCTGTCCGTACTGCTCTCGTGGCTACAAACGTTACACCTCACTGAAGGAGCACATTAAATACAGACACGAGAAGAGCGAGGACAACTTCAGCTGCTCTCTCTGCAGCTACACCTTTGCCTACAGAACACAGCTGGACAGACACATGACCGCACACAAAGCTGGCCGAGAACAG
Seq A exon
CGGCATGTTACTCAGTCAGGTGGAGGAGGGAATCGAAAGTTTAAATGCACTGAATGTGGCAAAGCCTTCAAGTACAAACACCACCTGAAAGAACACCTGCGCATCCACAGTG
Seq C2 exon
GAGAAAAGCCTTATGAATGCTCCAACTGCAAGAAGCGTTTCTCTCATTCCGGTTCCTACAGTTCCCACATAAGCAGTAAGAAGTGCATTGGTCTCATCTCAGTAAATGGACGACCACGACCTTCTCCTGCTACAGGGGCTGCCAAGACCCCGCAGTGCTCTTCCCCGTCCCTGCCAACCTCCTCCCCTACAGCACGAGTCCAAGTAAGAGACAAACTGGATAACAGCAAACCCCTTCAAGAGCAGCTTCCCTTGACACAGATCAAGTCTGAGCCGCTGGACTATGAGTACAAGCCTGTGGTAGTGGCCCCATCTGCTAGAGGCGTAAATGGCATGTTTCAGGGTGGGGCAGCAGCCCCTCTCCAGGGTGCCGTACAGGCTGTTGTGCTTCCAACTGTGGGACTGGTGTCCCCAATCAGCATCAATCTGGGGGACTTACAAAACGTGCTAAAGGTGGCAGTGGATGGGAATGTCATTAGGCAAGTGCTGGAAAGCACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013207-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.221 A=0.211 C2=0.463
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=83.8)
A:
PF134651=zf-H2C2_2=PU(38.5=26.3)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.7),PF0004624=Homeobox=WD(100=8.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCAGCTCCTCACCTGTCC
R:
TGGGAACTGTAGGAACCGGAA
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]