RnoEX0100915 @ rn6
Exon Skipping
Gene
ENSRNOG00000017863 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:RGD Symbol;Acc:3831]
Coordinates
chr17:54663592-54670854:-
Coord C1 exon
chr17:54670652-54670854
Coord A exon
chr17:54668681-54668786
Coord C2 exon
chr17:54663592-54664760
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATGCCAATTCTTTCTTCCAGAGA
3' ss Score
7.89
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAACACCAGATGCATTTTCCCAGTTGCTCACCTGCCCGTATTGTGATAGAGGCTACAAGCGCTTTACCTCTTTGAAAGAACACATTAAGTACCGCCATGAGAAGAATGAAGACAACTTCAGCTGCTCCCTGTGCAGTTACACCTTTGCATACAGAACCCAGCTTGAACGTCATATGACATCACATAAGTCAGGAAGAGAGCAA
Seq A exon
AGACATGTGACACAGTCTGGAGGTAACCGTAAGTTCAAGTGCACCGAGTGTGGGAAAGCGTTCAAGTACAAACACCATCTGAAGGAGCACTTACGGATCCACAGTG
Seq C2 exon
GAGAGAAGCCATATGAATGCCCAAACTGCAAGAAACGTTTTTCCCATTCTGGCTCTTATAGCTCACACATAAGCAGTAAGAAGTGTATTAGCTTGATGCCTGTGAATGGTAGGCCCAGATCAGGACTCAAGACATCTCAGTGTTCCTCGCCATCTCTTTCAACATCACCAGGCAGTCCCACACGCCCACAGATACGGCAGAAGATAGAGAATAAACCCCTTCAAGAACCGCTTTCTGTAAACCAAATCAAAACTGAACCTGTGGATTATGAGTTCAAACCCATAGTGGTTGCTTCAGGAATCAACTGTTCAACCCCTTTACAAAATGGGGTTTTTAGCGGTGGTGGCCAATTGCAGGCAACCAGTTCTCCTCAGGGTGTGGTGCAAGCTGTTGTTCTGCCAACAGTTGGTTTGGTATCTCCCATAAGTATCAACTTAAGTGACATTCAGAATGTACTTAAAGTGGCTGTAGATGGTAACATAATACGACAGGTTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017863-'6-11,'6-9,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.236 C2=0.450
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=83.8)
A:
PF134651=zf-H2C2_2=PU(38.5=27.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=3.8),PF0004624=Homeobox=WD(100=12.6)
Main Skipping Isoform:
ENSRNOT00000024336fB16846
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACTTCAGCTGCTCCCTG
R:
AGATGGCGAGGAACACTGAGA
Band lengths:
248-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]