GgaEX1065115 @ galGal4
Exon Skipping
Gene
ENSGALG00000007260 | ZEB1
Description
zinc finger E-box-binding homeobox 1 [Source:RefSeq peptide;Acc:NP_990462]
Coordinates
chr2:14312446-14319627:-
Coord C1 exon
chr2:14319425-14319627
Coord A exon
chr2:14315679-14315784
Coord C2 exon
chr2:14312446-14314256
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGCAAATTCTGTCTTGCAGAGA
3' ss Score
8.46
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GAACGCCCGATGCATTTTCCCAGCTGCTCACTTGCCCGTACTGTGACAGAGGGTACAAACGCTTCACCTCTCTGAAGGAACACATTAAATACCGCCATGAAAAGAACGAGGATAACTTCAGTTGCTCCCTCTGCAGTTACACGTTTGCGTATAGAACACAGCTGGACCGCCACATGACGTCGCACAAGTCGGGACGAGATCAG
Seq A exon
AGACATGTGACGCAGTCCAGTGGTAATCGAAAATTCAAGTGCACTGAATGTGGAAAAGCTTTCAAATATAAACATCATCTAAAGGAACACCTACGAATCCACAGTG
Seq C2 exon
GAGAGAAGCCATATGAGTGCCCAAACTGCAAGAAACGTTTTTCCCATTCTGGTTCATACAGCTCACACATAAGCAGTAAGAAGTGTATTGGTTTGATGCCCGTGAATGGTCGAGCTCGGTCAGGGCTCAAGATGTCTCAGTGCTCCTCCCCTTCCCTTTCTGCATCGCCCGGTAGCCCAGCAAGACCACAGATACGACAAAAGATAGAAAATAAACCCTTGCAAGAGCAACTTCCTGTTAACCAAATTAAAACTGAACCTGTGGATTATGAATTCAAGCCCATAGTGGTTGCTTCAGGAATTAATTGTTCGACCCCTTTGCAGAATGGGGTTTTTAGTGGTGGTAGCCCGTTGCAGGCAACCAGTTCTCCTCAGGGTGTGGTGCAAGCTGTTGTTCTGCCAACAGTGGGTCTGGTGTCTCCCATAAGCATCAACTTAAGTGACATTCAAAATGTACTTAAAGTGGCAGTGGATGGTAATGTAATAAGGCAAGTATTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007260-'19-18,'19-16,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.167 C2=0.563
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=83.8)
A:
PF134651=zf-H2C2_2=PU(38.5=27.8)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.5),PF0004624=Homeobox=WD(100=8.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCATGAAAAGAACGAGGA
R:
GCACTGAGACATCTTGAGCCC
Band lengths:
255-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]