DreEX0087605 @ danRer10
Exon Skipping
Gene
ENSDARG00000098099 | zgc:64065
Description
zgc:64065 [Source:ZFIN;Acc:ZDB-GENE-040426-1355]
Coordinates
chr6:8921959-8925854:+
Coord C1 exon
chr6:8921959-8922120
Coord A exon
chr6:8922289-8922463
Coord C2 exon
chr6:8923761-8925854
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCCTTTTTATGAAGCCT
3' ss Score
5.63
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GAGGCAATGGAAGAAGTCGATACATGGTTAGGAAAGCACTCTAAGGAGGTAGTCATCCTTGCTTTCTCACATTTCAAGAAAATGTCAACTGAACAACACACAAAGCTGATGACGTTCCTCAAAGACCATTTCAAAGCCAAACTCTGTCCTGATTATGGAGTG
Seq A exon
CCTTCACTCAAGGACTGCTGGGATAAAGCCTATCAGGTTATCCTCTCTTATGATGACAGAAATCGAAAACAGGATCGTGTTTTGTGGCCTGGAATTAAGTACTGGTGGGCTAATAATTCAGACCCCAATGAGGCCATTTTATTCCTCGATAACAAGAAACAATCAGGCAGACCAA
Seq C2 exon
AGGGATTTTTTGTTGCTGGTCTCAACCTGACTTTTTATGGGTGTAGCATTTTCTCGAACCTCACAGCCTCATTAAAGGAGAAGACCGTGACGGCTTACCCTTTGTTGCTGGATTGGGTGAAGAAGCAACGCCCGGGCTCAGATACACAAAGCATCAACATCATCGCTGGAGATTTTTTTGACGTGAACAGCTTTGCTCAAGATATCATTCAGCTCAATGATGCCAAAACCAATTAATGAAGATCTAGTGGACAGAGGTAGATACTGTTACATTTCATGAATGAACGAAATAATATATATTGTAGTCTGTTAAATGGGGGTGCATTAGAATGCTGCAGAGATGACATGTTTTATAGGCCAAAACATCTACCGTTGGAACCAGAAGTTTACATACACTCTAAAAAAAGGAACATAACCATTTAAAAAAATGTCTGATGGTAATCATACTATATTTTAGGTCCGTTAGGATTACCTAAATGATTTACATTTGCTAAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098099_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0038814=PI-PLC-X=FE(32.5=100)
A:
PF0038814=PI-PLC-X=PD(10.4=28.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATGACGTTCCTCAAAGAC
R:
TGAGCAAAGCTGTTCACGTCA
Band lengths:
258-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]