DreEX6001350 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10738515-10739042:+
Coord C1 exon
chr4:10738515-10738601
Coord A exon
chr4:10738682-10738793
Coord C2 exon
chr4:10738865-10739042
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCTATTGTCTTTTGTTTTAGTGC
3' ss Score
9.6
5' ss Seq
AAAGTACAA
5' ss Score
-1.85
Exon sequences
Seq C1 exon
ACTCCTCAGTGCTGTAAAGGTTTTTTTGGACCTGACTGTTCCCCATGCCCGGGTGGTTTTACCACCCCCTGTTCCTCTCACGGGACG
Seq A exon
TGCTCAGAAGGCATTGATGGAAACGGCACGTGCCAGTGTGAGCCCAAGTTCAAAGGATCGCGCTGCCAATACTGCGCTGACTCCAACAAATATGGCCCGAACTGTGACAAAA
Seq C2 exon
CCTGTTGGTGCATACATGGCACATGCGATAACCATCCAGAAGCCAGTGGGAAATGTAAGCAGGGCTCCTGTAAAGACGGCTATACCGGAGAGTACTGCGAGCTGCAGACCCAGCCGTGTGGACCAAACCAGCCCTGTCATGCACACGCCAACTGTGTGTCCAATAAAGGAGCATTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129472=EGF_3=PU(57.1=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCAGTGCTGTAAAGGT
R:
ATTGGACACACAGTTGGCGTG
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]