MmuEX6050445 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86937893-86942269:-
Coord C1 exon
chr10:86942183-86942269
Coord A exon
chr10:86940619-86940730
Coord C2 exon
chr10:86937893-86938073
Length
112 bp
Sequences
Splice sites
3' ss Seq
GGGGCTGCCTTTGCTCTCAGTGC
3' ss Score
6.62
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATACCAAGATGCTGTAAAGGTTTCTTCGGACCTGACTGCAACCCATGTCCAGGAGGCTTCATGAATCCGTGTTCTGGAAATGGGCAG
Seq A exon
TGCATAGACGGCCTCGGTGGCAATGGGACCTGCATCTGTGAGGATGGCTTCCAAGGTTCCAGGTGTCAGTTCTGCTCCAAACCCAACAGATATGGACCTCAGTGTAACAGAA
Seq C2 exon
CCTGCCAGTGTGTTCATGGAATATGTGATAACAGACTGGACAGCGATGGATCCTGCCTGCCAGGAACATGCCGAGAGGGCACAGCTGGGAGGTTCTGTGACAAGCAGACGTCAGCCTGTGGGCCCTATATGCAATTCTGTCACATCCATGCCACCTGTGAATACAGCAATGAGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'22-31,'22-29,23-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(37.1=44.8)
A:
PF0000822=EGF=PD(57.1=52.6)
C2:
PF129472=EGF_3=PU(58.3=34.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCTTCGGACCTGACTGC
R:
TGGCTGTCTCATTGCTGTATTCA
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types