GgaEX6002365 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56863488-56866365:-
Coord C1 exon
chr1:56866279-56866365
Coord A exon
chr1:56865651-56865762
Coord C2 exon
chr1:56863488-56863668
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTTCCGTATTGCAGTGC
3' ss Score
8.64
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAACCAAGGTGTTGCAAAGGCTTCTTCGGCCCCAACTGCAGTCCATGCCCAGGAGGTTTTTCCAAACCCTGCTCAGGAAATGGACAG
Seq A exon
TGCATAGATGGCCTGGATGGAAATGGGACCTGCATTTGTGCTGCGGCATTTCAAGGCTCTCTCTGCCAGTTCTGCTCAGACCCTGACAAATACGGACCTCAATGTGACAAAA
Seq C2 exon
AGTGCCTCTGCATTTATGGGAAGTGTGATAACCGAATAGACAGCGATGGAATCTGTCTTCCTGGATCATGCAGAAATGGATACACCGGGAAATTCTGCGATAAGGCAGTTGTTCCCTGCGAGCCCTCTCTGCAGCTCTGCCATGAGCACGCAGACTGTCAGCTTAGTGATGGTGCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(37.1=44.8)
A:
PF0000822=EGF=PD(57.1=52.6)
C2:
PF129472=EGF_3=PU(58.3=34.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAAGGTGTTGCAAAGGC
R:
CTAAGCTGACAGTCTGCGTGC
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]