RnoEX0086564 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27465920-27471430:-
Coord C1 exon
chr7:27471344-27471430
Coord A exon
chr7:27469465-27469576
Coord C2 exon
chr7:27465920-27466100
Length
112 bp
Sequences
Splice sites
3' ss Seq
GGGGTTGCCTTTGCTCGCAGTGC
3' ss Score
6.45
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATACCCAGATGCTGCAAAGGTTTCTTTGGGCCCGACTGCACCCCATGTCCAGGAGGCTTCTTGACTCCATGTTCCGGAAATGGGCAG
Seq A exon
TGCATGGACGGACTTGCTGGCAACGGGACTTGCATTTGCCAGGATGGCTTCCAAGGTTCCATGTGTCAGTTCTGCTCCGACCCCAACAGATACGGACCCCGGTGTAACAGAA
Seq C2 exon
CCTGCCTGTGTGTTCATGGGACATGTGACAACAGACTGGACAGCGATGGAGCCTGCCTGTCAGGGACATGCCGAGAAGGCACAGCTGGGCGGTTCTGTGACAAGCAGACATCAGCCTGTGGGCCCTATGTGCAATTTTGTCACATTCATGCCTCCTGTGAATACAGCAATAAGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(38.2=44.8)
A:
PF0000822=EGF=PD(55.9=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGATGCTGCAAAGGTTT
R:
CACAGGAGGCATGAATGTGACA
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]