DreEX6001360 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10728752-10729218:+
Coord C1 exon
chr4:10728752-10728818
Coord A exon
chr4:10728913-10729008
Coord C2 exon
chr4:10729096-10729218
Length
96 bp
Sequences
Splice sites
3' ss Seq
GAATTTCTTGTGCTGGTTAGTGT
3' ss Score
3.21
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TCTGGTTTTACAGGAGCAGCTTGCGAGGAATGCAAAACAGACTTATATGGACCCACTTGCAGTAATG
Seq A exon
TGTGTCGTTGCAAGAATGGACTGTGTAGCAGCGGTTTGAAAGGAACAGGAGAGTGCACATGTTTTTCTGGGTACACCGGCCTAGACTGCGCCCAAG
Seq C2 exon
AGCTCCCAGCATGTGCTGCTTTGCAGTGTGGGCCGGATTCTCGTTGTATCGAGGAAATGTTGACAGGGCAGCTTGTGTGCAAGTGCAAACCTGGTTATCAAGGGGATGGAGTACAGTGTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(15.2=21.7)
A:
NO
C2:
PF129472=EGF_3=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTACAGGAGCAGCTTGC
R:
CCCCTTGATAACCAGGTTTGCA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]