GgaEX6002354 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54991141-54993978:-
Coord C1 exon
chr1:54993909-54993978
Coord A exon
chr1:54991549-54991644
Coord C2 exon
chr1:54991141-54991266
Length
96 bp
Sequences
Splice sites
3' ss Seq
CAATCCATCTCTCCATCTAGTTT
3' ss Score
6.76
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
AAAGGATTTGCTGGGACAGCCTGTGAAAAATGTGCTGAAGATCATTTATTTGGTCCTCAGTGCACATCAG
Seq A exon
TTTGCAACTGTGTTCATGGAGTATGCAACAGTGGAATTACAGGAGATGGAAGATGCACTTGCTTGTCTGGATACCAAGGTCTCAGCTGTGATCAAC
Seq C2 exon
CAATAGCTGAATGCAAGGCCTTGCGGTGCCCTGCAAACTCAAGATGTACTACCTCAGGCAAGGATGGCAGAAGACTGCAATGCACATGTCTACCCAACTACCATGGAGATGGTACACAATGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(19.4=29.2)
A:
PF129472=EGF_3=PU(0.1=0.0)
C2:
PF129472=EGF_3=WD(100=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCCTGTGAAAAATGTGC
R:
CCATCTCCATGGTAGTTGGGT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]