MmuEX6050429 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86969748-86980000:-
Coord C1 exon
chr10:86979931-86980000
Coord A exon
chr10:86972837-86972932
Coord C2 exon
chr10:86969748-86969873
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCTCATTTTCTGCCCACAGTGT
3' ss Score
10.74
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAGGCTTTCGTGGAACAGCCTGTGAGAACTGTGCTGCTGAAGACGTTTTTGGTCCCAATTGTTCAGCAG
Seq A exon
TGTGCAGTTGTGTCCATGGTGTGTGCAACAGCGGGATCAGTGGTGACGGAACTTGTGAGTGCTTGTCTGCGTACAGGGGGCCCAGGTGTGACAAGC
Seq C2 exon
CCATCCCTGAGTGTGCAGCCTTGCTCTGCCCAGAAAACTCCAGATGCTCACCTTCCAGCAAAGACGAAACCAAACTCCAGTGCAAATGCCTTCCCAGTTACAAAGGGGACGGCCAGACCTGCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'6-11,'6-10,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129472=EGF_3=WD(100=79.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGTGGAACAGCCTGTGAG
R:
CCCCTTTGTAACTGGGAAGGC
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types