RnoEX6030977 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27505376-27515307:-
Coord C1 exon
chr7:27515238-27515307
Coord A exon
chr7:27508000-27508095
Coord C2 exon
chr7:27505376-27505501
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCTCGTTTTCTGCCCACAGTCT
3' ss Score
10.39
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAGGCTTCAGTGGAACAGCCTGTGAAGCCTGTGCTACTGACAACGTTTTTGGGCCCAACTGTTCAGCAG
Seq A exon
TCTGCAGCTGTGTCCACGGTGTGTGCAACAGCGGGCTCAACGGTGACGGAACCTGTGAGTGCTTGTCTGCATACAGGGGTCCCAAGTGCGACAAGC
Seq C2 exon
CCATCCCGGAGTGTGCAACCTTGCTCTGCCCAGAAAACTCCAGATGTTCACCTTCCAGCAAAGATGAAACTAAACTTCAGTGCAAATGCCTTCCCAATTACGAAGGGGACGGCCATAACTGCAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'4-8,'4-5,7-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129472=EGF_3=WD(100=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCCAGCTTCACAGTTT
R:
AACTGGCAGACACACTTGACC
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]