RnoEX6030975 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27504743-27538327:-
Coord C1 exon
chr7:27538212-27538327
Coord A exon
chr7:27516748-27516833
Coord C2 exon
chr7:27504743-27504850
Length
86 bp
Sequences
Splice sites
3' ss Seq
GGTCTGTTTGATTATTCCAGAGT
3' ss Score
5.14
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTATTCGCTTGACATCCAGTCATACGTTCTGGCCATCCCTGGATGCCGCCATATCTGTAGGAAGGATTATCTACAACCTCAATGTTGTCCAGGACACTGGGGCCCAGACTGCATGG
Seq A exon
AGTGCCCAGGAGGAGCAAGGGCACCATGCGGTGGCAGGGGCGTTTGTGACGAAGGCATGGAAGGGACTGGAAGCTGCTCCTGCCAA
Seq C2 exon
AGTTGTTCCTACCTGGGCCAAATCGCACATTTGCATATGCCAAAAGGCTACAAGAGAGATGGTCAAGTGTGTCTGCCAGTTGGACCCTGCCAAACAGAACTATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'3-8,'3-3,5-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATACGTTCTGGCCATCCCT
R:
AACTGGCAGACACACTTGACC
Band lengths:
178-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]