MmuEX6050427 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86442676-86459665:-
Coord C1 exon
chr10:86459550-86459665
Coord A exon
chr10:86443836-86443921
Coord C2 exon
chr10:86442676-86442745
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGAATGTTTGACTGTTCCAGAGT
3' ss Score
6.66
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTATTCGCTTAAAATCCAGTCCTACGTCCTGGATATCCCTGGATGCCGCCATATCTGTAGGAAGGATTACCTGCAACCTCAATGTTGTCCAGGACACTGGGGCCCAGACTGCATGG
Seq A exon
AGTGTCCAGGAGGAGCAAGGGCACCGTGTGGTGGCAGGGGTGTTTGTGATGAAGGCATGGAAGGAACCGGAAGCTGCTCCTGCCGG
Seq C2 exon
GCAGGCTTTCGTGGAACAGCCTGTGAGAACTGTGCTGCTGAAGACGTTTTTGGTCCCAATTGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'2-5,'2-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=PU(75.0=93.1)
C2:
PF079748=EGF_2=PD(19.4=29.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCAGTCCTACGTCCTGGA
R:
CTGCTGAACAATTGGGACCAA
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: