HsaEX6068741 @ hg38
Exon Skipping
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103594395-103622111:+
Coord C1 exon
chr12:103594395-103594510
Coord A exon
chr12:103620468-103620553
Coord C2 exon
chr12:103622042-103622111
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGAGCTGTTTGATTCCCTAGAGT
3' ss Score
7.33
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTACACCTTTGAGGTCAGAACATACTCTCTGTCTCTCCCCGGATGCCGCCATATTTGTAGGAAGGACTATCTCCAACCTCGGTGTTGTCCTGGCCGCTGGGGCCCAGACTGTATAG
Seq A exon
AGTGCCCAGGTGGAGCGGGGTCACCCTGCAATGGCAGAGGCAGTTGTGCTGAAGGCATGGAAGGAAATGGAACCTGCTCCTGCCAA
Seq C2 exon
GAAGGGTTTGGTGGAACAGCCTGTGAAACCTGTGCTGACGACAACTTATTTGGACCCAGCTGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-'2-7,'2-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(46.8=75.9)
C2:
PF0005319=Laminin_EGF=FE(48.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACTCTCTGTCTCTCCCCG
R:
CTGATGAACAGCTGGGTCCAA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains