MmuEX6050427 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86979931-86996920:-
Coord C1 exon
chr10:86996805-86996920
Coord A exon
chr10:86981091-86981176
Coord C2 exon
chr10:86979931-86980000
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGAATGTTTGACTGTTCCAGAGT
3' ss Score
6.66
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTATTCGCTTAAAATCCAGTCCTACGTCCTGGATATCCCTGGATGCCGCCATATCTGTAGGAAGGATTACCTGCAACCTCAATGTTGTCCAGGACACTGGGGCCCAGACTGCATGG
Seq A exon
AGTGTCCAGGAGGAGCAAGGGCACCGTGTGGTGGCAGGGGTGTTTGTGATGAAGGCATGGAAGGAACCGGAAGCTGCTCCTGCCGG
Seq C2 exon
GCAGGCTTTCGTGGAACAGCCTGTGAGAACTGTGCTGCTGAAGACGTTTTTGGTCCCAATTGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'2-8,'2-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCAGTCCTACGTCCTGGA
R:
CTGCTGAACAATTGGGACCAA
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types