BtaEX6022837 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67619460-67634300:+
Coord C1 exon
chr5:67619460-67619575
Coord A exon
chr5:67633350-67633435
Coord C2 exon
chr5:67634231-67634300
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTTGATTCCCCAGAGT
3' ss Score
9.09
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTACACCTTTGAGGTCAGAGCATACTCCCTCTCTCTCCCCGGATGCCGCCATATCTGTAGGAAGGACTATCTCCAGCCTCAGTGCTGCCCAGGCCATTGGGGCCCAGACTGCATGG
Seq A exon
AGTGCCCGGGAGGAGCAAGGTCCCCCTGCAGTGGCCGGGGCCGTTGTGCTGAAGGCATGGAAGGAAATGGAAGCTGCTTATGCCAG
Seq C2 exon
GAAGGATTCAGTGGAACAGCCTGTGAAATCTGCGCTGCTGACAACGTATTTGGGCCCAACTGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCAGAGCATACTCCCT
R:
AGTTGGGCCCAAATACGTTGT
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]