DreEX6001384 @ danRer10
Exon Skipping
Gene
ENSDARG00000095981 | si:ch211-161n3.5
Description
si:ch211-161n3.5 [Source:ZFIN;Acc:ZDB-GENE-110913-81]
Coordinates
chr4:10930317-10931250:-
Coord C1 exon
chr4:10930933-10931250
Coord A exon
chr4:10930470-10930772
Coord C2 exon
chr4:10930317-10930388
Length
303 bp
Sequences
Splice sites
3' ss Seq
ATTGTATGCCATCCGTTTAGAAT
3' ss Score
4.99
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAACGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTAGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACATATTTGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGAAAACATGACTGTCTACACGAGGAGGATGTAGGAGTCATCTGCTCTG
Seq A exon
AATTTACAGAGATCAGGTTAACTGACGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTTAAATCAGATGGACAGAGACACAGCGAGTCTGATCTGTCAGGAGCTGAACTGTGGAAGATCTGGCAGTGAACCCAGTCATTCAGTGAGCCTGAGATCTGCTCCTAAATGGTTGGATCATCTTAAATGCAGAAAACATGACAAAACATTGTATCATTGTCCATCTTTACCCTGGGGTAAGAACCACTGCTATATAGATGAGGTGGCCAAAATCACTTGCTCTG
Seq C2 exon
AAAAAGAGACTGATGAGTCACCAAAGAGTCATCTGACATGTTCAGCATTTCCTCACCACAAACAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095981-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=93.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGGCTGGAGGTTTTTC
R:
ACTGTTTGTGGTGAGGAAATGCT
Band lengths:
342-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]