DreEX6002490 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20490969-20492088:-
Coord C1 exon
chr4:20492009-20492088
Coord A exon
chr4:20491804-20491884
Coord C2 exon
chr4:20490969-20491103
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGCACCATTTTTTTCTAGGAG
3' ss Score
8.17
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCTCCTTGTACAGAATAAGCTACCAGCAGTGTGTGAGCTTAGATAAGCTGTTGCCATACTCCTGTGTATTTGAGAAGAAG
Seq A exon
GAGCTTCCTGTGGCTCTGACGGCAATCTCTGGTGTGAAATGCACCCCTGAACTGCTCTGTCAACCAATAATCAAAGGGAAG
Seq C2 exon
GCTAAAAGCCTGCAAGGTTACTGGGAAGAGCTTCAGCATGTTTTGGACAGGATGAGGTATTTCGAGGCGGTACCATGTCCACGCTTCAGGACCAGTCTGATTAAAGAGGACTGGACTAAACTTCAGGCTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTTGCCATACTCCTGTG
R:
AGCAGCCTGAAGTTTAGTCCA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]