BtaEX0027165 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44111798-44125325:+
Coord C1 exon
chr4:44111798-44111880
Coord A exon
chr4:44116081-44116134
Coord C2 exon
chr4:44125197-44125325
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTCCCCCTCCACAGGAA
3' ss Score
11.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTTCTTCATATTGGAGCATTTATCCAGAGACAAGTAACATGGATAAACTTTTGCCGTATTCCTCACTGCTCACTTGGGATACA
Seq A exon
GAAATTCCTGGAATAACCCTTGTGACAGAAGAGATTCCGTTGCCTCTTATGAAG
Seq C2 exon
GTGCATAGCTTTAAGGGCTACTGGGAAAAACTGAACTCCAACCTGGAATATGTTAAGTACTCCAAGCCACACTTACACTATAACAACAGCGTGGTCAGGAGAGAGTGGCACAACCTGATCTCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCACTGCTCACTTGGGA
R:
GTTGTGCCACTCTCTCCTGAC
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development