GgaEX0012044 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13669879-13674696:+
Coord C1 exon
chr1:13669879-13669961
Coord A exon
chr1:13670602-13670655
Coord C2 exon
chr1:13674571-13674696
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTATCATTTGTATTGATAGGTT
3' ss Score
7.47
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CCTCTCTGTACTGCAGAATGTGTCCAGAAACCAACAACCTGGATAAACTCTTGCCCTACACATCACTGCTTGACTGGACTGGG
Seq A exon
GTTATCCCTGGAGTAGCATGTGCAACAGACATTATTTCTCTACCTGTGTTAGAG
Seq C2 exon
ATGCAAAACTCTAAAGGCTTCTGGGAGAAACTCGACTCAAACTTGGAGAGTGTGAAGTATGCAGAGCCACACTTGCATTACCACAATAATGTGCTCAGGAGGGAATGGCGTAATCTCTCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'19-22,'19-20,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF042697=DUF440=PU(16.5=35.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGAAACCAACAACCTGG
R:
GCAAGTGTGGCTCTGCATACT
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]