HsaEX0047662 @ hg38
Exon Skipping
Gene
ENSG00000186088 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr7:77330239-77353026:-
Coord C1 exon
chr7:77352944-77353026
Coord A exon
chr7:77349351-77349404
Coord C2 exon
chr7:77330239-77330367
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTCCCCACTATAGGAA
3' ss Score
10.46
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CTTCTTCATACTGGAGTGTATATTCAGAGACAAGTAACATGGACAAACTATTGCCACATTCCTCAGTGCTCACTTGGAATACA
Seq A exon
GAAATTCCTGGAATAACTCTTGTGACAGAAGACATTGCATTGCCTCTTATGAAG
Seq C2 exon
GTGCTCAGCTTTAAGGGCTACTGGGAAAAACTGAACTCCAACCTAGAATATGTTAAGTACGCCAAGCCACACTTCCACTATAACAACAGTGTGGTCAGGAGAGAGTGGCACAACCTGATCTCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088_MULTIEX4-1/5=C1-3
Average complexity
S
Mappability confidence:
86%=100=86%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCACATTCCTCAGTGCTC
R:
CCACTCTCTCCTGACCACACT
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development