MmuEX6016082 @ mm9
Exon Skipping
Gene
ENSMUSG00000039934 | Pion
Description
pigeon homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:20759777-20775848:+
Coord C1 exon
chr5:20759777-20759859
Coord A exon
chr5:20763688-20763741
Coord C2 exon
chr5:20775720-20775848
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTATGTTTCCCTGTCCTAGGAA
3' ss Score
10.12
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTTCCTCCTATTGGAGTGTGTATGCAGAGCTGGACGACATGGGCATGCTCCTACAATACTCCTCTGTGCTGACTTGGAACACA
Seq A exon
GAAATTCCCGGAATAAAGTTTACGACAGAGGAACTCCCATTGCCTCTTATGAAG
Seq C2 exon
GTCTACGGCTTGAAGGGGTACTGGGCAAAGCTGAACTCCAACCTTGAGTACATTAAGTATACAAAACCTCACTTGCACTATCACAACAGCGTCGTGAGGAGGGAATGGCATAACCTGATCTCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTCTGTGCTGACTTGGA
R:
TATGCCATTCCCTCCTCACGA
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: