RnoEX0040221 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10441152-10456693:-
Coord C1 exon
chr4:10456611-10456693
Coord A exon
chr4:10452828-10452881
Coord C2 exon
chr4:10441152-10441280
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTCATGTTTCCCGGCATAGGAA
3' ss Score
6.71
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CGTCCTCCTATTGGAGTGTGTATCCAGGGCTGGATGACGTGGACCTGCTCTTACCCTACTCCTCTGTGCTGACATGGGACACA
Seq A exon
GAAATTCCTGGAATGAAGCTTGTGACAGAAGAGCTCCCGTTACCTCTTATGAAG
Seq C2 exon
GTCTACAGCTTGAAGGGGTACTGGGCAAAGCTGAACTCCAACCTCGAGTATATTAAGTACACCAAGCCTCACCTGCACTACCACAACAGCGTCGTGAGGAGAGAGTGGCATAACCTGATCTCTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'21-31,'21-30,23-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGACCTGCTCTTACCCTA
R:
GTTGTGGTAGTGCAGGTGAGG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]