DreEX6003638 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6553437-6555227:-
Coord C1 exon
chr7:6555163-6555227
Coord A exon
chr7:6554856-6554924
Coord C2 exon
chr7:6553437-6553515
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTTGATGTATATATTTAGACG
3' ss Score
4.36
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ATAAAGATTTAAAGACAGACGGCTTTGGTAAGGAGTCGTGTCGGAGTATGATCAACCTCATGGAC
Seq A exon
ACGGATGGCAGTGGGAAACTCGGACTCGTAGAGTTTCATGTGTTGTGGGAGAAGATTAAACGCTACCTG
Seq C2 exon
CAAATCTTCCGCGATCACGATGTGGATAAATCAGGCACTATGAGCTCGTATGAGATGAGGAAAGCTCTGGAAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'22-21,'22-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.5=21.7)
C2:
PF134991=EF-hand_7=FE(28.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGATTTAAAGACAGACGGCTTTG
R:
CTGCAGTTTCCAGAGCTTTCCT
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]