MmuEX6030879 @ mm9
Exon Skipping
Gene
ENSMUSG00000024942 | Capn1
Description
calpain 1 [Source:MGI Symbol;Acc:MGI:88263]
Coordinates
chr19:5991539-5992414:-
Coord C1 exon
chr19:5992350-5992414
Coord A exon
chr19:5991856-5991924
Coord C2 exon
chr19:5991539-5991617
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTAACATCTGCCAAGCGA
3' ss Score
1.29
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
ACAAAGACCTGCGCACTAATGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT
Seq A exon
CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG
Seq C2 exon
ACCATCTTCCGGAAGTTTGACCTGGACAAGTCTGGCAGCATGAGTGCCTATGAGATGAGGATGGCCATCGAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024942-'20-25,'20-23,21-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(3.4=13.0)
C2:
PF134991=EF-hand_7=FE(29.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACCTGCGCACTAATGGC
R:
CCTCGATGGCCATCCTCATCT
Band lengths:
136-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: