GgaEX6029718 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29682590-29683645:-
Coord C1 exon
chr3:29683581-29683645
Coord A exon
chr3:29682773-29682841
Coord C2 exon
chr3:29682590-29682668
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTAACCCTCTGCTGTCCAGAAA
3' ss Score
4.22
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
ACAAAGATCTGAAGACGGATGGCTTCAGTCTGGACTCCTGCCGCAACATGGTCAACCTGATGGAT
Seq A exon
AAAGATGGCAGTGCCCGCCTGGGGCTGGTGGAGTTCCAGATCCTATGGAACAAGATCCGCAGCTGGCTG
Seq C2 exon
ACAATCTTCCGCCAGTATGACCTGGATAAATCAGGCACCATGAGCTCATACGAGATGCGCATGGCTCTAGAGTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'21-25,'21-22,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(3.6=4.3)
C2:
PF0003627=EF-hand_1=PD(89.3=92.6)
Main Skipping Isoform:
ENSGALT00000016557fB5737
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGATCTGAAGACGGATGGC
R:
CAGCTGACTCTAGAGCCATGC
Band lengths:
144-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]