MmuEX6077895 @ mm10
Exon Skipping
Gene
ENSMUSG00000058626 | Capn11
Description
calpain 11 [Source:MGI Symbol;Acc:MGI:1352490]
Coordinates
chr17:45632009-45632763:-
Coord C1 exon
chr17:45632699-45632763
Coord A exon
chr17:45632381-45632449
Coord C2 exon
chr17:45632009-45632087
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTTGACTAATCTCCCTAGAAA
3' ss Score
6.54
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
TAAGGAACTTCAAGACGAAGGGCTTTAGCTTGGAAGTCTGTCGCCGGATGATCAACCTCCTGGAT
Seq A exon
AAAGATGGTTCTGGCAAGCTGGAGCTTCATGAATTCCAGGTCCTGTGGAAAAAGATCAAGAAATGGACG
Seq C2 exon
GAAATCTTCAAAGAGTGTGATGAGGACCGCTCAGGGAACTTGAACTCCTATGAGATGCGCCTGGCAATAGAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058626-'28-24,'28-22,29-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGACGAAGGGCTTTAGCT
R:
TGCTTTCTCTATTGCCAGGCG
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types