DreEX6063032 @ danRer10
Exon Skipping
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42558643-42561576:-
Coord C1 exon
chr13:42561512-42561576
Coord A exon
chr13:42560321-42560389
Coord C2 exon
chr13:42558643-42558721
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTTTGACTCCATTCATCAGAAA
3' ss Score
4.88
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACAAAGATGTGAAGACAGACGGCTTCAGCATGGACTCCTGCAGAACGATGGTCAACCTCCTGGAT
Seq A exon
AAAGATGGGAGCGCACGTTTGGGCTTAGTCGAGTTTCAGATCCTCTGGAACAAAATAAGGAAGTTGCTG
Seq C2 exon
GGGATCTTCAGAGAGTTTGATATTGATAAGTCAGGAACTATGAGCTCTTATGAGATGCGTCTCGCTGTAGAATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-'22-25,'22-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
C2:
PF0003627=EF-hand_1=PD(86.2=92.6)
Main Skipping Isoform:
ENSDART00000046066fB1696
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGATGTGAAGACAGACGGC
R:
AGACGCATCTCATAAGAGCTCA
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]