RnoEX6038891 @ rn6
Exon Skipping
Gene
ENSRNOG00000026025 | Capn11
Description
calpain 11 [Source:RGD Symbol;Acc:1302946]
Coordinates
chr9:17747370-17748417:+
Coord C1 exon
chr9:17747370-17747434
Coord A exon
chr9:17747705-17747773
Coord C2 exon
chr9:17748339-17748417
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTTGACTAATCTCCCTAGAAA
3' ss Score
6.54
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TCAAGAGCTTCAAGTCGAAGGGCTTTAGCTTGGATGTCTGTCGCCGTATGGTCAACCTCATGGAC
Seq A exon
AAAGACGATTCTGGAAAGCTGGGGCTTCATGAGTTCCATATCCTATGGAAAAAGATCAAGAAATGGATG
Seq C2 exon
GAAATCTTCAAAGAGTGTGATCAAGACCGCTCAGGGAACTTGAACTCCTACGAGATGCGCTTGGCAATAGAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026025-'19-28,'19-26,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(35.0=100)
A:
PF138331=EF-hand_8=PD(30.0=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
C2:
PF0003627=EF-hand_1=PD(86.2=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGTCGAAGGGCTTTAGCT
R:
GCTTTCTCTATTGCCAAGCGC
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]