BtaEX0006982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17817772-17819172:+
Coord C1 exon
chr23:17817772-17817840
Coord A exon
chr23:17818455-17818523
Coord C2 exon
chr23:17819094-17819172
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGACTGCCTCTCCTCTCAGAAA
3' ss Score
9.9
5' ss Seq
ACGGTAAAG
5' ss Score
7
Exon sequences
Seq C1 exon
GAGAGCATCTCTGAGACCGACATAGACCAGGACTTCGTACGTTTGTTTCACATAGTGGCCGGTGGAGAG
Seq A exon
AAAGATGGCTCTGGCAAACTGGGGCTTCGGGAGTTTCAGGTCCTGTGGAGAAAAATCAAGAAATGGACG
Seq C2 exon
GACATCTTCCGAGAGTGTGACCAGGACCAGTCAGGCACCTTGAATTCCTATGAGATGCGCTTGGCAGTTGAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.6=21.7)
C2:
PF134991=EF-hand_7=FE(28.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCATCTCTGAGACCGACA
R:
CTGCTTTCTCAACTGCCAAGC
Band lengths:
147-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development