BtaINT0031269 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021066 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr23:17818455-17819172:+
Coord C1 exon
chr23:17818455-17818523
Coord A exon
chr23:17818524-17819093
Coord C2 exon
chr23:17819094-17819172
Length
570 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
ACAACTGCCTGTCCCTTCAGGAC
3' ss Score
11.08
Exon sequences
Seq C1 exon
AAAGATGGCTCTGGCAAACTGGGGCTTCGGGAGTTTCAGGTCCTGTGGAGAAAAATCAAGAAATGGACG
Seq A exon
GTAAAGGGCATTGAGGGGGCAGTTTATGGGGGTGAGAGAGGTCCTTGTGAGGAATGAGGACTAGGAGGTCTAACAAAGATGAAACTGTAACAGGAGCCCCTGACTAGACATGCGCGTGTACACACACACACACACACAAACACACCCTGGGACAGAGTTGTTGACATGCTGCCACATGAAATAGTCAAAATGTTCCCGGAACTTTCCTGACAGTCTCAGTGGTTGGGACTTCTTCCAATGTGGGGGGTGTGGATTGGATCCCTGGTCAAGAAACTAAGATCCCTACCCTGCAATGTGGCTAAAAAAAAATGAAAATAAAAATAAAATTCAATAACCAGCAGAGTCTAGGTATCAACTAACATAAAGGATACAGGCAGAGAGCCCTGAGCAAGGTGCCAGGAGCCAGCTCTGCAGTCACCAGGCGATAGGAATATGGGAGCTCAGGTGTAGGCCGGCGGGGGACGGGGCACGGGGGCTCCTGGGGGCTTGGGTGGTGGTTGTGAAGCATTTCACCCCTTGTGAAGCATTGTGCCCTGCACATGGCCCTACCACAACTGCCTGTCCCTTCAG
Seq C2 exon
GACATCTTCCGAGAGTGTGACCAGGACCAGTCAGGCACCTTGAATTCCTATGAGATGCGCTTGGCAGTTGAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021066:ENSBTAT00000004690:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.6=21.7)
A:
NA
C2:
PF134991=EF-hand_7=FE(28.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]