GgaINT0088810 @ galGal3
Intron Retention
Gene
ENSGALG00000010186 | CANX_CHICK
Description
NA
Coordinates
chr3:31552397-31552648:-
Coord C1 exon
chr3:31552580-31552648
Coord A exon
chr3:31552476-31552579
Coord C2 exon
chr3:31552397-31552475
Length
104 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTCTGTGATGGCTTTTGCAGACA
3' ss Score
7.99
Exon sequences
Seq C1 exon
AAAGATGGCAGTGCCCGCCTGGGGCTGGTGGAGTTCCAGATCCTATGGAACAAGATCCGCAGCTGGCTG
Seq A exon
GTGAGGAGGAGAGGGATGCAAGGGGTAGCACCCTGCTGGGGCAGGGGGATGACCAAGCCGCAGGGAGGGCCTGCCATTCACGTCCTCTGTGATGGCTTTTGCAG
Seq C2 exon
ACAATCTTCCGCCAGTATGACCTGGATAAATCAGGCACCATGAGCTCATACGAGATGCGCATGGCTCTAGAGTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186:ENSGALT00000016557:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(3.6=4.3)
A:
NA
C2:
PF0003627=EF-hand_1=PD(89.3=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGCTGGTGGAGTT
R:
CAGCTGACTCTAGAGCCATGC
Band lengths:
131-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]