HsaINT0027360 @ hg38
Intron Retention
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr6:44181252-44183019:+
Coord C1 exon
chr6:44181252-44181320
Coord A exon
chr6:44181321-44182940
Coord C2 exon
chr6:44182941-44183019
Length
1620 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
ATATCTGTCTGTCTCTTCAGGAC
3' ss Score
12.22
Exon sequences
Seq C1 exon
AAAGATGGCTCTGGCAAGCTGGGGCTTCTAGAGTTCAAGATCCTGTGGAAAAAACTCAAGAAATGGATG
Seq A exon
GTAAAGGGCACTAAAGGGGCAGCCTCCAGGGGTGAGGAAAAGAGGGTCTTAGGAGAGATGGAACTAATGAGGGGAAGCTAGAACCCAAGCCCTAACCACACACACACACACACCCAACCACACCACACTCACACACACACACACACACTCACATACAGACACAACCACACCACACACACACACACACACTCACATACAGACACAACCACACCACACTCACACACACACACACTCACATACAGACACAACCACACCACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACATACTCACATACAGACACAACCACACCACACTCACACACACACACACTCACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACACACTCACATACAGACACAACCACACCACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACATACAGACACAACCACACCACACACACACACACATACACACTCACATACAGACACAACCACACCACACACACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACATACACACTCACATACAGACACAACCACACCACACTCACACACACACATACACACTCACATACAGACACAACCACACCACACACACACACACATACAGACACAACCACACCACACACACACACACACACACACACACTCACATACAGACACAACCACACCACACACACACATGAAAAGGGTCTGTTGGAGTGTGGCATATTACCCAGTCAAAATATTTTATAACAAGTATAGCTCAGGTATCATCTAGTCATGAAGGATGCACACAAAGAGCGCTGGGCAGGGCACCAGTGCCCCCGACAACCCATGCTTGGAATTAACCCTTAGGTCACCAGATGATAGGAATATCAGGAGTGGGCCAGGGTTGGAGGGGGGCATGGGGTCTTAGGCCACTGCTGTGAGCCAACTGTCCTAAAGTATTTCTTTTTCTTTTTTTTGAGACGGAATCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCTGCTTACTGTAACCTCCGCCTCCTGCCTCAGCCTCCTGACTAGCTGGGATTACAGGCATGCACCACCACACCCAGCTAATTTTTGTAGTTTTATTAGAGACGGGGTTTCGTCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGATGATCCGCCTGCCTCGGCCTTTCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTCAGTATTTCATTATTTCAACCACCATGCCATGCATGTGGCCCTACCATATCTGTCTGTCTCTTCAG
Seq C2 exon
GACATCTTCAGAGAGTGTGACCAGGACCATTCAGGCACCTTGAACTCCTATGAGATGCGCCTGGTTATTGAGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225:ENST00000398776:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.3=21.7)
A:
NA
C2:
PF134991=EF-hand_7=FE(27.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development