RnoEX6045699 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100884163-100885720:-
Coord C1 exon
chr13:100885656-100885720
Coord A exon
chr13:100884612-100884680
Coord C2 exon
chr13:100884163-100884241
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTAACCGAGGGCAGGAA
3' ss Score
0.78
5' ss Seq
CAAGTAGGG
5' ss Score
3.87
Exon sequences
Seq C1 exon
GCGAAGACATCAAGTCAGATGGCTTCAGCATCGAGACCTGTAAGATCATGGTGGACATGCTGGAT
Seq A exon
GAAGATGGGAGCGGCAAGCTGGGGCTGAAGGAGTTCTACATCCTCTGGACGAAGATTCAGAAATACCAA
Seq C2 exon
AAAATTTACCGAGAGATCGACGTGGACAGGTCGGGAACCATGAATTCCTATGAGATGCGGAAGGCTTTGGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'28-30,'28-28,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.4=8.7)
C2:
PF134991=EF-hand_7=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAAGTCAGATGGCTTCAGCA
R:
GCTTCTTCCAAAGCCTTCCGC
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]