GgaEX6029106 @ galGal3
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
NA
Coordinates
chr3:18800168-18802156:-
Coord C1 exon
chr3:18802092-18802156
Coord A exon
chr3:18800908-18800976
Coord C2 exon
chr3:18800168-18800246
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTACCTTGACTCCAACAAGAAC
3' ss Score
0.85
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCCAAGATATTAAATCTGATGGCTTTAGCATTGAGACGTGCAAAATAATGGTTGACCTGCTAGAT
Seq A exon
AACGATGGGAGTGGAAAACTGGGGCTGAAGGAGTTCCACACGCTCTGGACAAAGATTCAGAAATATCAG
Seq C2 exon
AAAATTTACAGGGAAATTGACGTGGATCGATCTGGAACCATGAACTCGTATGAGATGAGGAGAGCGCTGGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100),PF0175117=Toprim=FE(19.6=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0175117=Toprim=FE(20.6=100),PF134991=EF-hand_7=PU(2.4=8.7)
C2:
PF0175117=Toprim=FE(24.3=100),PF134991=EF-hand_7=FE(30.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGATGGCTTTAGCATTGAGAC
R:
CTTCCAGCGCTCTCCTCATCT
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]