MmuEX6029813 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182472521-182473946:-
Coord C1 exon
chr1:182473882-182473946
Coord A exon
chr1:182472924-182472992
Coord C2 exon
chr1:182472521-182472599
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTAACCGAGGGCAGGAA
3' ss Score
0.32
5' ss Seq
CAAGTATGG
5' ss Score
4.99
Exon sequences
Seq C1 exon
GCCAAGACATCAAGTCAGACGGCTTCAGCATCGAGACCTGTAAGATCATGGTGGACATGCTGGAT
Seq A exon
GAAGATGGGAGTGGCAAGCTTGGCCTGAAGGAGTTCTACATCCTCTGGACGAAGATTCAGAAATACCAA
Seq C2 exon
AAAATCTACCGGGAAATCGATGTGGACAGGTCTGGAACCATGAATTCCTACGAGATGCGGAAAGCACTGGAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'30-37,'30-35,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.4=8.7)
C2:
PF134991=EF-hand_7=FE(30.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGTCAGACGGCTTCAGC
R:
TGCTTCTTCCAGTGCTTTCCG
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types