DreEX6006232 @ danRer10
Exon Skipping
Gene
ENSDARG00000017676 | mmp2
Description
matrix metallopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9123]
Coordinates
chr7:35156134-35156893:-
Coord C1 exon
chr7:35156765-35156893
Coord A exon
chr7:35156472-35156645
Coord C2 exon
chr7:35156134-35156307
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCTTCTGACGTAGTGG
3' ss Score
6.99
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
AACATGGTGATGGTTATCCATTTGATGGCAAGGATGGTCTGCTGGCTCATGCATTTGCCCCTGGACCTGGTATTGGAGGAGACTCTCACTTTGATGATGATGAGCAGTGGACTTTAGGAGAAGGACAAG
Seq A exon
TGGTAAAGGTGAAGTACGGTAATGCTGAGGGCGAGTTCTGTAAGTTTCCATTTTTGTTCATGGGTAAAGAGTACAACAGCTGCACCTCTCAGGGTCGAGATGATGGGTTCCTTTGGTGCTCCACCACATACAACTTTGATGATGATGGAAAGTACGGCTTCTGTCCCCATGAGC
Seq C2 exon
TCCTGTTCACATTGGGTGGAAATGCAGATGGAGCCCCTTGTAAGTTCCCTTTCACATTCCAGGGCGACAAATATGATAGCTGCACCACCTCAGGCAGAGATGATGGATACCGCTGGTGTGCAACCACTGAAGATTATGACAAGGACAAGACTTACGGATTCTGTCCTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017676-'3-8,'3-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(13.1=100)
A:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCCCCTGGACCTGGTAT
R:
GGACAGAATCCGTAAGTCTTGTCC
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]