RnoEX6059789 @ rn6
Exon Skipping
Gene
ENSRNOG00000016695 | Mmp2
Description
matrix metallopeptidase 2 [Source:RGD Symbol;Acc:621316]
Coordinates
chr19:15560640-15564202:-
Coord C1 exon
chr19:15564074-15564202
Coord A exon
chr19:15563706-15563879
Coord C2 exon
chr19:15560640-15560813
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTGTATGTCTTGCAGTGG
3' ss Score
7.52
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCATGGAGATGGATACCCATTTGACGGCAAGGACGGACTCCTGGCACATGCCTTTGCCCCGGGCACTGGTGTTGGGGGAGATTCTCACTTTGATGACGATGAGCTGTGGACTCTAGGAGAAGGACAAG
Seq A exon
TGGTCCGAGTAAAGTATGGGAACGCTGATGGCGAGTACTGCAAGTTCCCCTTCTTGTTTAATGGTCGGGAATACAGCAGCTGCACAGACACTGGCCGGAGTGACGGCTTCCTCTGGTGTTCCACCACGTACAACTTTGAGAAGGACGGCAAATATGGCTTCTGTCCCCACGAAG
Seq C2 exon
CCTTGTTTACCATGGGTGGCAATGGAGATGGACAGCCCTGCAAGTTCCCGTTCCGCTTCCAGGGCACCTCTTACAACAGCTGTACCACCGAGGGCCGTACAGACGGCTACCGCTGGTGTGGCACCACCGAGGATTATGACCGGGATAAGAAGTATGGATTCTGCCCAGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016695-'6-9,'6-6,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(13.1=100)
A:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCATTTGACGGCAAGGAC
R:
CATAATCCTCGGTGGTGCCAC
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]