MmuEX6037309 @ mm9
Exon Skipping
Gene
ENSMUSG00000031740 | Mmp2
Description
matrix metallopeptidase 2 [Source:MGI Symbol;Acc:MGI:97009]
Coordinates
chr8:95356663-95360041:+
Coord C1 exon
chr8:95356663-95356791
Coord A exon
chr8:95356968-95357141
Coord C2 exon
chr8:95359868-95360041
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTGTGTGTCCTGCAGTGG
3' ss Score
6.92
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCATGGAGATGGATACCCATTTGATGGCAAGGATGGACTCCTGGCACATGCCTTTGCCCCGGGCACTGGTGTTGGGGGAGATTCTCACTTTGATGATGATGAGCTGTGGACCCTGGGAGAAGGACAAG
Seq A exon
TGGTCCGCGTAAAGTATGGGAACGCTGATGGCGAGTACTGCAAGTTCCCCTTCCTGTTCAACGGTCGGGAATACAGCAGCTGTACAGACACTGGTCGCAGTGATGGCTTCCTCTGGTGCTCCACCACATACAACTTTGAGAAGGATGGCAAGTATGGCTTCTGCCCCCATGAAG
Seq C2 exon
CCTTGTTTACCATGGGTGGCAATGCAGATGGACAGCCCTGCAAGTTCCCGTTCCGCTTCCAGGGCACCTCCTACAACAGCTGTACCACCGAGGGCCGCACCGATGGCTACCGCTGGTGTGGCACCACCGAGGACTATGACCGGGATAAGAAGTATGGATTCTGTCCCGAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031740-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0041319=Peptidase_M10=FE(13.1=100)
A:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
C2:
PF0041319=Peptidase_M10=FE(17.6=100),PF0004014=fn2=WD(100=71.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGCAAGGATGGACTCC
R:
TATCCCGGTCATAGTCCTCGG
Band lengths:
255-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: