DreEX6006869 @ danRer10
Exon Skipping
Gene
ENSDARG00000094709 | arl8
Description
ADP-ribosylation factor-like 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5762]
Coordinates
chr7:41438153-41440338:-
Coord C1 exon
chr7:41440191-41440338
Coord A exon
chr7:41438434-41438517
Coord C2 exon
chr7:41438153-41438304
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTTTTCTCTGGCAGTTC
3' ss Score
10.6
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTAATGAATGAGGTGGTGCACACATCTCCTACGATTGGCAGCAATGTGGAAGAAATAGTGGTGAAGAAAACCCACTTCCTGATGTGGGATATTGGTGGTCAAGAGAGTCTCCGCTCTTCCTGGAACACATACTACTCCAACACTGAG
Seq A exon
TTCATCATACTGGTAGTGGACAGTACGGACAGAGAGAGACTAGCCATTTCAAAAGAAGAGCTTTACAGAATGCTTGCGCACGAG
Seq C2 exon
GATTTGCGCAAAGCTGCAGTGTTGATCTTTGCTAATAAGCAGGACATGAAAGGATGTATGTCAGCAGCAGAGATTTCCAAATACCTGACACTCAGCTCCATCAAGGATCATCCATGGCACATCCAGTCCTGCTGTGCGCTCACTGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094709-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.0=54.0)
A:
PF0002516=Arf=FE(15.3=100)
C2:
PF0002516=Arf=FE(28.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTCAAGAGAGTCTCCG
R:
TGGATGTGCCATGGATGATCC
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]