GgaEX1009086 @ galGal3
Exon Skipping
Gene
ENSGALG00000008557 | E1BQL0_CHICK
Description
NA
Coordinates
chr2:19009248-19014082:-
Coord C1 exon
chr2:19013935-19014082
Coord A exon
chr2:19011037-19011120
Coord C2 exon
chr2:19009248-19009399
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGCTATTTTTTTTCCTTAGTTC
3' ss Score
8.14
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTAGAAGAAATAGTGGTGAAAAACACCCATTTCTTAATGTGGGATATCGGAGGACAAGAATCGTTACGGTCATCATGGAATACCTACTATTCAAACACAGAG
Seq A exon
TTCATCATTCTTGTGGTTGACAGCATTGACAGAGAGCGACTTTCTATTACAAAAGAAGAGCTTTATAGAATGCTGGCTCATGAG
Seq C2 exon
GATTTACGGAAGGCTGCAGTTCTCATTTTTGCAAACAAGCAGGACATGAAGGGTTGCATGACAGCTGCTGAGATATCTGCATACCTCACCCTTAGCTCCATAAAGGATCATCCATGGCACATTCAGTCTTGTTGCGCTTTGACAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008557-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF128032=G-7-MTase=PD(45.9=56.0),PF0002516=Arf=FE(27.8=100)
A:
PF0002516=Arf=FE(15.3=100)
C2:
PF0002516=Arf=FE(28.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGACAAGAATCGTTACGG
R:
ACTGAATGTGCCATGGATGATCC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]