HsaEX0005872 @ hg19
Exon Skipping
Gene
ENSG00000165997 | ARL5B
Description
ADP-ribosylation factor-like 5B [Source:HGNC Symbol;Acc:23052]
Coordinates
chr10:18957459-18963064:+
Coord C1 exon
chr10:18957459-18957606
Coord A exon
chr10:18961551-18961634
Coord C2 exon
chr10:18962913-18963064
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTAATTTTCTTCTAGTTC
3' ss Score
8.93
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGATATTGGTGGTCAGGAGTCTCTGCGATCATCCTGGAACACATATTACTCAAATACAGAG
Seq A exon
TTCATCATTCTTGTTGTTGATAGCATTGACAGGGAACGACTAGCTATTACAAAAGAAGAATTATACAGAATGTTGGCTCATGAG
Seq C2 exon
GATTTACGGAAGGCTGCAGTCCTTATCTTTGCAAATAAACAGGATATGAAAGGGTGTATGACAGCAGCTGAAATCTCGAAATACCTCACCCTTAGTTCAATTAAGGATCATCCATGGCACATTCAATCCTGCTGTGCTCTCACAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165997_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0),PF0231712=Octopine_DH=FE(41.2=100)
A:
PF0002516=Arf=FE(15.3=100),PF0231712=Octopine_DH=FE(22.7=100)
C2:
PF0002516=Arf=FE(28.4=100),PF0231712=Octopine_DH=PD(27.7=64.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTGCGATCATCCTGGA
R:
ACAGCAGGATTGAATGTGCCA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)