HsaEX0005872 @ hg38
Exon Skipping
Gene
ENSG00000165997 | ARL5B
Description
ADP ribosylation factor like GTPase 5B [Source:HGNC Symbol;Acc:HGNC:23052]
Coordinates
chr10:18668530-18674135:+
Coord C1 exon
chr10:18668530-18668677
Coord A exon
chr10:18672622-18672705
Coord C2 exon
chr10:18673984-18674135
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTAATTTTCTTCTAGTTC
3' ss Score
8.93
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CTTAATGAATGAAGTGGTTCATACTTCTCCAACCATAGGAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGATATTGGTGGTCAGGAGTCTCTGCGATCATCCTGGAACACATATTACTCAAATACAGAG
Seq A exon
TTCATCATTCTTGTTGTTGATAGCATTGACAGGGAACGACTAGCTATTACAAAAGAAGAATTATACAGAATGTTGGCTCATGAG
Seq C2 exon
GATTTACGGAAGGCTGCAGTCCTTATCTTTGCAAATAAACAGGATATGAAAGGGTGTATGACAGCAGCTGAAATCTCGAAATACCTCACCCTTAGTTCAATTAAGGATCATCCATGGCACATTCAATCCTGCTGTGCTCTCACAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165997_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0)
A:
PF0002516=Arf=FE(15.3=100)
C2:
PF0002516=Arf=FE(28.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCTGCGATCATCCTGGA
R:
ACAGCAGGATTGAATGTGCCA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development