DreEX6007775 @ danRer10
Exon Skipping
Gene
ENSDARG00000017010 | scamp2l
Description
secretory carrier membrane protein 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-6432]
Coordinates
chr7:56795087-56800285:+
Coord C1 exon
chr7:56795087-56795215
Coord A exon
chr7:56797773-56797932
Coord C2 exon
chr7:56800184-56800285
Length
160 bp
Sequences
Splice sites
3' ss Seq
CACACATTGTTTTTCTTCAGATC
3' ss Score
10.34
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTAAAGAAAACAACTGGCCGCCGTTGCCCAAGTTCTTGCCAATCAAACCTTGCTTTTATCAGGATTTTAATGAAGAAATTCCTGTGGAATATCAGAGGGTTTGCAAGATGATGTACTACCTCTGGATGT
Seq A exon
ATCACAGTGTGACACTGTTCCTGAATCTGCTGGCCTGCTTGGTGTATTTCACTGTATCTACTCAGAATGGAGTTGACTTTGGACTCTCAATCCTGTGGTTTATTTTGTTCACTCCTGTTGCTTTCGTCTGCTGGTACCGACCCGTATACAAGGCCTTTAA
Seq C2 exon
ATCTGACAGCTCCTTCAGTTTCTTCTTTTTCTTCTTCATCTTCTCATTCCAAGTGATCGTGTACATCATTCAGAGTGTGGGGATCCCCGGCTGGGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017010-'10-11,'10-9,11-11=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGAAAACAACTGGCCGCC
R:
GGGATCCCCACACTCTGAATG
Band lengths:
216-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]