DreEX6009022 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3634906-3636708:-
Coord C1 exon
chr5:3636599-3636708
Coord A exon
chr5:3635306-3635376
Coord C2 exon
chr5:3634906-3634976
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTGTTTGTGTTCAGGTC
3' ss Score
9.83
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGAATTCACTGGAAAGCCTGATGAAGATTTTGCACAGCACCACTCCACACTACACACGCTGCATTAAACCAAACCCGGACTGCAGACCACTCACTTTCCAAAAGGAAGAG
Seq A exon
GTCATCGCTCAGCTTGAAGCCTGTGGGATTGTGGAGACCATAAACATCAGTGCAGCGGGTTTTCCCATCAG
Seq C2 exon
GATCCCAAATGACAGCTTCTTCCAAAGATATGGGCTGATTGCAAACAACAGACTAGCAGCAAAGAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(28.1=97.3)
A:
PF0006316=Myosin_head=FE(18.8=100)
C2:
PF0006316=Myosin_head=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGGAAAGCCTGATGAAGA
R:
TGCTGCTAGTCTGTTGTTTGCA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]